These CI Links are crowd-sourced from the ConnectCI community and represent a “vetted” list of useful websites, training modules, and tutorials. CI links show up in tag search if they have the relevant tag attached. Affinity groups can include relevant CI links on their respective affinity group pages. Additional CI links are always welcome, click the “Add New CI Links” button to suggest one.
| Title | Description | Category | Tags | Skill Level | Affinity Group |
|---|---|---|---|---|---|
| Linux Tutorial from Ryan's Tutorials | The following pages are intended to give you a solid foundation in how to use the terminal, to get… more | Learning |
file-systems bash unix-environment | Beginner | |
| Wiki for Onboarding onto the C3DDB Cluster at MGHPCC | This is a resource for researchers and students looking to on-board onto the c3ddb cluster at… more | Learning |
Beginner | ||
| MPI Resources | Workshop for beginners and intermediate students in MPI which includes helpful exercises. Open MPI… more | Learning |
parallelization mpi | Beginner, Intermediate | |
| Thrust resources | Thrust is a CUDA library that optimizes parallelization on the GPU for you. The Thrust tutorial is… more | Learning |
resources more | Intermediate, Advanced, Expert | |
| Header-only C++ JSON library | JSON is a lightweight format for storing and transporting data, for example in a config file. This… more | Learning |
resources c++ | Intermediate, Advanced | |
| Examples of Thrust code for GPU Parallelization | Some examples for writing Thrust code. To compile, download the CUDA compiler from NVIDIA. This… more | Learning |
parallelization gpu cuda | Intermediate, Advanced, Expert | |
| Examples of code using JSON nlohmann header only Library for C++ | This code showcases how to work with the header-only nlohmann JSON library for C++. In order to… more | Learning |
c++ | Advanced | |
| Python | Python course offered by Texas A&M HPRC | Learning |
python | Beginner | |
| Texas A&M HPRC Training Site | Training Resources and Courses offered by Texas A&M's Research Computing Group | Learning |
Beginner, Intermediate, Advanced, Expert | ||
| Quick and Robust Data Augmentation with Albumentations Library | Data augmentation is a crucial step in the pipeline for image classification with deep learning.… more | Tool |
deep-learning python | Advanced, Expert | |
| Ask.CI Q&A Platform for Research Computing | Website |
Beginner, Intermediate, Advanced, Expert | Ask.CI Moderators | ||
| Git Branching Workflow and Maneuvers | A couple of resources that: 1.) Presents and defends a git branching workflow for… more |
Learning |
github git | Beginner, Intermediate, Advanced | |
| Slurm Scheduling Software Documentation | Slurm is an open source, fault-tolerant, and highly scalable cluster management and job scheduling… more | Website |
slurm cluster-support | Intermediate, Advanced | |
| Hour of Ci | Hour of Cyberinfrastructure (Hour of CI) is a nationwide campaign to introduce undergraduate and… more | Learning |
arcgis | Beginner | ArcGIS Users |
| RMACC Website | Rocky Mountain Advanced Computing Consortium Website | Website |
community-outreach | RMACC/Campus Champions Region 8 | |
| Women in HPC | Website |
community-outreach | Beginner | ||
| Open Storage Network | The Open Storage Network, a national resource available through the XSEDE resource allocation… more | Website |
data-management data-retention more | Beginner, Intermediate, Advanced, Expert | Large Data Sets |
| Open Storage Network | The Open Storage Network, a national resource available through the XSEDE resource allocation… more | Website |
data-management data-retention more | Beginner, Intermediate, Advanced, Expert | Open Storage Network |
| CaRCC Data Facing Track | The Data-Facing Track of the People Network brings together people from research computing groups,… more | Website |
data-access-protocols data-analysis data-compliance | Beginner, Intermediate, Advanced, Expert | Large Data Sets |
| Trusted CI | The mission of Trusted CI is to lead in the development of an NSF Cybersecurity Ecosystem with the… more | Website |
cybersecurity training | Beginner, Intermediate, Advanced, Expert | Cybersecurity for Research Computing |
| Regulated Research Community of Practice | The daily news clearly shows the increasing threat to safety and privacy of data, personal as well… more | Website |
community-outreach cybersecurity | Beginner, Intermediate, Advanced, Expert | Cybersecurity for Research Computing |
| RRCoP Resources Page | Very helpful list of Regulated Research Community of Practice's collaborating communities. | Website |
community-outreach cybersecurity | Beginner, Intermediate, Advanced, Expert | Cybersecurity for Research Computing |
| Trusted CI Resources Page | Very helpful list of external resources from Trusted CI | Website |
cybersecurity | Cybersecurity for Research Computing | |
| Research Security Operations Center at IU | The NSF-funded ResearchSOC helps make scientific computing resilient to cyberattacks and capable of… more | Website |
cybersecurity | Cybersecurity for Research Computing | |
| Higher Ed Controlled Unclassified Information Slack (HigherEdCUI) | Slack channel for the Higher Ed CUI community | Tool |
cybersecurity | Cybersecurity for Research Computing | |
| Educause HEISC-800-171 Community Group | The purpose of this group is to provide a forum to discuss NIST 800-171 compliance. Participants… more | Website |
cybersecurity | Cybersecurity for Research Computing | |
| How to use Rclone | Learn how to use Rclone to transfer data, specifically from your local drive to the Open Storage… more | Learning |
data-transfer | Beginner | |
| Slurm User Group Mailing List | Mailing List |
schedulers slurm | |||
| Jetstream Home | Website |
Jetstream-2 | |||
| Jetstream Home | Website |
AI Institutes Cyberinfrastructure | |||
| ACCESS Support Portal | Website |
ACCESS Support | |||
| ACCESS Support Portal | Website |
AI Institutes Cyberinfrastructure | |||
| Bridges-2 Home Page | Landing Page for Bridges-2 information | Website |
Bridges-2 | ||
| DARWIN Documentation Pages | Documentation |
big-data | DARWIN | ||
| DELTA Introductory Video | Introductory video about DELTA. Speaker Tim Boerner, Senior Assistant Director, NCSA | video |
gpu training | Delta | |
| Expanse Home Page | Website |
big-data | Expanse | ||
| ACCESS KB Guide - Expanse | Documentation |
composable-systems gpu | Expanse | ||
| ACCESS KB Guide - DELTA | Documentation |
Delta | |||
| ACCESS KB Guide - DELTA | Documentation |
AI Institutes Cyberinfrastructure | |||
| ACCESS KB Guide - Anvil | Documentation |
Anvil | |||
| Anvil Home Page | Website |
Anvil | |||
| Campus Champions Home Page | Website |
community-outreach professional-development | Beginner, Intermediate, Advanced, Expert | Campus Champions | |
| NCSA HPC-Moodle | Self-paced tutorials on high-end computing topics such as parallel computing, multi-core… more | Learning |
technical-training-for-hpc training workforce-development | Beginner, Intermediate, Advanced, Expert | |
| Jetstream2 Docs Site | Documentation |
jetstream | Beginner, Intermediate, Advanced, Expert | Jetstream-2 | |
| Jetstream2 Status | Website |
jetstream | Beginner, Intermediate, Advanced, Expert | Jetstream-2 | |
| ACCESS Pegasus Documentation | Documentation |
pegasus | Beginner, Intermediate, Advanced, Expert | Pegasus | |
| Rockfish at Johns Hopkins University | Resources and User Guide available at Rockfish | Documentation |
rockfish | Intermediate | |
| Machine Learning in R online book | The free online book for the mlr3 machine learning framework for R. Gives a comprehensive overview… more | Learning |
data-analysis machine-learning r | Beginner, Intermediate, Advanced, Expert | |
| Automated Machine Learning Book | The authoritative book on automated machine learning, which allows practitioners without ML… more | Learning |
ai data-analysis deep-learning more | Intermediate, Advanced, Expert | |
| ConnectCI | Connect.Cybinfrastructure is a family of portals, each representing a program that is serving a… more | Website |
Beginner, Intermediate, Advanced, Expert | Connect CI Alliance | |
| Applications of Machine Learning in Engineering and Parameter Tuning Tutorial | Slides for a tutorial on Machine Learning applications in Engineering and parameter tuning given at… more | Learning |
data-analysis machine-learning python | Beginner, Intermediate | |
| UNIX/command line basics tutorial | Introductory training materials for working on the UNIX command line. | Learning |
bash | Beginner | |
| Bash shell tutorial | Training materials for using the bash (and zsh) shell. | Learning |
bash | Intermediate | |
| ACCESS Campus Champion Example Allocation | ACCESS requests proposals to be written following NSF proposal guidelines. The link provides an… more | Learning |
allocations-proposal proposal-request research-facilitation | Beginner | |
| Framework to help in scaling Machine Learning/Deep Learning/AI/NLP Models to Web Application level | This framework will help in scaling Machine Learning/Deep Learning/Artificial Intelligence/Natural… more | Learning |
ai deep-learning machine-learning more | Intermediate | |
| GPU Computing Workshop Series for the Earth Science Community | GPU training series for scientists, software engineers, and students, with emphasis on Earth… more | Learning |
optimization performance-tuning profiling more | Beginner | |
| Oakridge Leadership Computing Facility (OLCF) Training Events and Archive | Upcoming training events and archives of training materials detailing general HPC best practices as… more | Learning |
PROFESSIONAL and WORKFORCE DEVELOPMENT technical-training-for-hpc training | Beginner, Intermediate, Advanced, Expert | |
| NERSC Training and Tutorials | A comprehensive collection of NERSC developed training and tutorial events, offered on regular… more | Learning |
PROFESSIONAL and WORKFORCE DEVELOPMENT technical-training-for-hpc training | Beginner, Intermediate, Advanced, Expert | |
| Better Scientific Software (BSSw) | The Better Scientific Software (BSSw) project provides a community to collaborate and learn about… more | Website |
PROFESSIONAL and WORKFORCE DEVELOPMENT community-outreach project-management more | Beginner, Intermediate, Advanced, Expert | |
| ACCESS HPC Workshop Series | Monthly workshops sponsored by ACCESS on a variety of HPC topics organized by Pittsburgh… more | Learning |
big-data deep-learning machine-learning more | Beginner, Intermediate | AI Institutes Cyberinfrastructure |
| Vulkan Support Survey across Systems | It's not uncommon to see beautiful visualizations in HPC center galleries, but the majority of… more | Documentation |
anvil bridges-2 darwin more | Beginner, Intermediate | |
| Resource to active inference | Active inference is an emerging study field in machine learning and computational neuroscience.… more | Website |
ai | Beginner, Intermediate, Advanced | |
| Active inference textbook | This textbook is the first comprehensive treatment of active inference, an integrative perspective… more | Learning |
ai machine-learning neural-networks | Beginner, Intermediate, Advanced | |
| Python Tools for Data Science | Python has become a very popular programming language and software ecosystem for work in Data… more | Video Link |
ai big-data data-analysis more | Intermediate | |
| NCSA HPC Training Moodle | Self-paced tutorials on high-end computing topics such as parallel computing, multi-core… more | Learning |
performance-tuning profiling parallelization more | Beginner, Intermediate | |
| Using Dask on HPC Systems | A tutorial on the effective use of Dask on HPC resources. The four-hour tutorial will be split into… more | Learning |
PROFESSIONAL and WORKFORCE DEVELOPMENT technical-training-for-hpc jupyterhub more | Beginner, Intermediate | |
| Probabilistic Semantic Data Association for Collaborative Human-Robot Sensing | Humans cannot always be treated as oracles for collaborative sensing. Robots thus need to maintain… more | Documentation |
ai machine-learning | Advanced, Expert | |
| Displaying Scientific Data with Tableau | Tableau is a popular and capable software product for creating charts that present data and… more | Video Link |
big-data data-analysis technical-training-for-hpc more | Intermediate | |
| Data Analysis with R for Educators | This webinar series is an orientation to R. We start with an overview of R’s history and place in… more | Video Link |
data-analysis data-science psychology more | Beginner | |
| WRF in the Public Cloud | CAC summer student employee Jeff Lantz describes his experiences in running the WRF weather… more | Video Link |
aws azure cloud-commercial more | Advanced | |
| Harnessing the Power of Cloud and Machine Learning for Climate and Ocean Advances | Documentation and presentation on how to use machine learning and deep learning framework using… more | Learning |
CLOUD machine-learning | Intermediate | |
| Language models and using HPC resources | Documentation and research based on the latest NLP text generation detection methods for 2023. | Learning |
ACCESS RPs | Intermediate | |
| MDAnalysis - Python library for the analysis of molecular dynamics simulations | MDAnalysis is a python based library of tools for the analysis of molecular dynamics simulations.… more | Tool |
computational-chemistry materials-science python | Beginner, Intermediate, Advanced, Expert | |
| Info about retiring of R GIS packages rgdal, rgeos, maptools in 2023 | R GIS packages "rgdal", "rgeos", and "maptools" are package set to be… more | Documentation |
r | Beginner, Intermediate, Advanced, Expert | |
| Geocomputation with R (Free Reference Book) | Below is a link for a book that focuses on how to use "sf" and "terra" packages… more | Learning |
r | Beginner, Intermediate | |
| GIS: What is a Geodetic Datums? | Often when working with GIS, or spatial data, one encounters the word "datum" and it may… more | Learning |
FIELD of SCIENCE | Beginner | |
| GIS: Projections and their distortions | In GIS, projections are helpful to take something plotted on a globe and convert it to a flat map… more | Learning |
geographic-information-system | Beginner, Intermediate | |
| GIS: Geocoding Services | Geocoding is the process of taking a street address and converting it into coordinates that can be… more | Documentation |
geographic-information-system | Beginner, Intermediate | |
| Neurostars | A question and answer forum for neuroscience researchers, infrastructure providers and software… more | Website |
documentation image-processing data-sharing more | Beginner, Intermediate, Advanced, Expert | |
| Neurodesk | Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of… more | Website |
psychology containers software-installation more | Beginner, Intermediate, Advanced | |
| Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks | This repository contains information about Jupyter Widgets and how they can be used to develop… more | Website |
ANALYSES and ALGORITHMS ai big-data more | Beginner, Intermediate, Advanced, Expert | |
| NITRC | The Neuroimaging Tools and Resources Collaboratory (NITRC) is a neuroimaging informatics knowledge… more | Website |
data-analysis image-processing data-sharing | Beginner, Intermediate, Advanced, Expert | |
| Why 'N How: Martinos Center for Biomedical Imaging: | The Why & How seminar series is designed to introduce research assistants, graduate students,… more | Learning |
image-processing | Beginner, Intermediate, Advanced | |
| FSL Lectures | This is the official University of Oxford FSL group lecture page. This includes information on… more | Learning |
data-analysis image-processing psychology | Beginner, Intermediate, Advanced | |
| FreeSurfer Tutorials | The official MGH / Harvard tutorial page for FreeSurfer. The FreeSurfer group has provided and… more | Learning |
data-analysis image-processing psychology | Beginner, Intermediate | |
| Paraview UArizona HPC links (beginner) | These links take you to visualization resources supported by the University of Arizona's HPC… more | Documentation |
Beginner | ||
| Introductory Tutorial to Numpy and Pandas for Data Analysis | In this tutorial, I present an overview with many examples of the use of Numpy and Pandas for data… more | Documentation |
ai big-data data-analysis more | Beginner | |
| UCLA Extended Reality (XR) collaboration resources and Workshop | Comprehensive Extended Reality (XR) collaboration resources for building a high performance… more | Presentation |
documentation setup neural-networks | Beginner, Intermediate, Advanced, Expert | |
| Guide to building AirSim on Linux machines | This article provides step-by-step instructions on how to build AirSim, a simulator for autonomous… more | Documentation |
documentation setup github more | Beginner, Intermediate | |
| Building the ArduPilot environment for Linux | This article provides instructions for building AirSim, an open-source simulator for autonomous… more | Documentation |
setup profiling data-transfer more | Beginner | |
| Paraview UArizona HPC links (advanced) | These links take you to visualization resources supported by the University of Arizona's HPC… more | Documentation |
Intermediate, Advanced | ||
| OpenMP and Multithreaded Jobs in GRASS | Techniques and support for multithreaded geospatial data processing in GRASS. | Tool |
parallelization geographic-information-system openmp | Intermediate | |
| GDAL Multi-threading | Multi-threading guidance when using GDAL. | Learning |
parallelization geographic-information-system | Intermediate | |
| QGIS Processing Executor | Running QGIS tools from the command line | Documentation |
geographic-information-system | Intermediate | |
| CUDA Toolkit Documentation | NVIDIA CUDA Toolkit Documentation: If you are working with GPUs in HPC, the NVIDIA CUDA Toolkit is… more | Documentation |
documentation c c++ more | Intermediate, Advanced | |
| Warewulf documentation | Warewulf is an operating system provisioning platform for Linux that is designed to produce secure… more | Website |
documentation administering-hpc distributed-computing more | Beginner, Intermediate | |
| AHPCC documentary | This link is a documentary website to use AHPCC. | Documentation |
login batch-jobs slurm more | Beginner, Intermediate | |
| HPCwire | HPCwire is a prominent news and information source for the HPC community. Their website offers… more | Website |
documentation bioinformatics pytorch more | Beginner, Intermediate, Advanced, Expert | |
| CHARMM Links to Install, Run, and Troubleshoot MD Simulations | CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a widely distributed molecular simulation… more | Learning |
charmm molecular-dynamics namd more | Beginner, Intermediate | |
| Molecular Dynamics Tutorials for Beginner's | Links to MD tutorials for beginner's across various simulation platforms. | Learning |
cloud-computing amber charmm more | Beginner | |
| Reinforcement Learning For Beginners with Python | This course takes through the fundamentals required to get started with reinforcement learning with… more | Video Link |
deep-learning machine-learning tensorflow more | Beginner | |
| Use Windows Subsystem for Linux for HPC Command Line Access from Windows | Windows Subsystem for Linux (WSL) provides a Linux environment for Windows users to access HPC… more | Tool |
workflow ssh | Beginner | |
| What is fairness in ML? | This article discusses the importance of fairness in machine learning and provides insights into… more | Documentation |
ai visualization data-analysis more | Intermediate | |
| Fairness and Machine Learning | The "Fairness and Machine Learning" book offers a rigorous exploration of fairness in ML… more | Documentation |
ai data-analysis deep-learning more | Intermediate, Advanced, Expert | |
| A survey on datasets for fairness-aware machine learning | The research paper provides an overview of various datasets that have been used to study fairness… more | Documentation |
ai data-analysis deep-learning more | Intermediate, Advanced, Expert | |
| Introduction to Parallel Computing Tutorial | The tutorial is intended to provide a brief overview of the extensive and broad topic of Parallel… more | Learning |
Beginner | ||
| Slurm Tutorials | Introduction to the Slurm Workload Manager for users and system administrators, plus some material… more | Learning |
administering-hpc cluster-management hpc-cluster-architecture more | Beginner | |
| Mechanism and Implementation of Various MPI Libraries | There is a detailed explanation about communication routines and managing methods of different MPI… more | Website |
mpi | Beginner | |
| Moving-Lid-Driven Flow Simulation by Finite Difference Method | The listed repository contains code written in C++ to model the flow inside a cavity with a lid… more | Documentation |
computational-fluid-dynamics | Intermediate | |
| Benchmarking with a cross-platform open-source flow solver, PyFR | What is PyFR and how does it solve fluid flow problems? PyFR is an open-source Computational… more |
Tool |
finite-element-analysis benchmarking parallelization more | Intermediate | |
| Setting up PyFR flow solver on clusters | These instructions were executed on the FASTER and Grace cluster computing facilities at Texas A… more | Learning |
faster computational-fluid-dynamics c++ more | Advanced | |
| DAGMan for orchestrating complex workflows on HTC resources (High Throughput Computing) | DAGMan (Directed Acyclic Graph Manager) is a meta-scheduler for HTCondor. It manages dependencies… more | Tool |
open-science-grid | Intermediate, Advanced, Expert | |
| Tutorial for OpenMP Building up and Utilization | The following link elaborates the usage of OpenMP API and its related syntax. There are also… more | Website |
openmp | Beginner | |
| File management of Visual Studio Code on clusters | Visual Studio Code, commonly known as VSCode, is a popular tool used by programmers worldwide. It… more | Learning |
faster file-limit SCRATCH more | Intermediate | |
| Version control with Git | Understand the benefits of an automated version control system and the basics of how automated… more | Learning |
version-control github git | Beginner | |
| Open OnDemand | Open OnDemand home page. https://openondemand.org | Website |
more | Beginner, Intermediate, Advanced, Expert | Open Ondemand |
| Open OnDemand | Open OnDemand home page. https://openondemand.org | Website |
more | Beginner, Intermediate, Advanced, Expert | AI Institutes Cyberinfrastructure |
| The Carpentries | We teach foundational coding and data science skills to researchers worldwide. | Website |
training | Beginner, Intermediate, Advanced, Expert | |
| Using Linux commands in a python script (and the difference between the subprocess and os python modules) | Learn how to use Linux commands in a python script. Specifically, learn how to use the subprocess… more | Learning |
programming python | Beginner, Intermediate | |
| HPC Carpentry | An HPC focused Carpentry community. Trainings include: HPC fundamentals, python, chapel, LAMMPS,… more | Website |
software-carpentry training | Beginner, Intermediate, Advanced, Expert | |
| Introduction to Python for Digital Humanities and Computational Research | This documentation contains introductory material on Python Programming for Digital Humanities and… more | Documentation |
ai big-data data-analysis more | Beginner | |
| PyTorch for Deep Learning and Natural Language Processing | PyTorch is a Python library that supports accelerated GPU processing for Machine Learning and Deep… more | Documentation |
ai big-data data-analysis more | Beginner | |
| Cornell Virtual Workshop | Comprehensive training resource for high performance computing topics. Current tags are just a… more | Learning |
performance-tuning python more | Beginner, Intermediate, Advanced, Expert | |
| HPC University | A comprehensive list of training resources. The tag list does not represent the full extent of… more | Learning |
python r more | Beginner, Intermediate, Advanced, Expert |