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UID:7111253c-36fc-46ab-afe7-94cffbea349b@support.access-ci.org
DTSTAMP:20230509T123239Z
DTSTART:20230615T180000Z
DTEND:20230615T190000Z
SUMMARY:Expanse: Run your Jupyter Notebooks anywhere: Scaling up your Proje
 cts from your Laptop
DESCRIPTION:Are you running out of resources on your local machine? While J
 upyter Notebooks has become the de facto software environment for interact
 ive data analysis, visualization, and machine learning, running notebooks 
 on an HPC system is challenging. We demonstrate the Galyleo command-line t
 ool and the Expanse Portal to run Jupyter Notebooks on Expanse. The Expans
 e portal provides an integrated and easy-to-use web interface to access Ex
 panse HPC resources. We also cover setting up reproducible and transferabl
 e software environments from your local machine to Expanse using Conda. We
  demonstrate scaling up calculations to large datasets and parallel comput
 ing on Expanse, as well as running Jupyter Notebooks in batch mode.\n\n---
 --\nInstructor\nPeter Rose\nDirector for Structural Bioinformatics Laborat
 ory\n\nDr. Rose is Director of the Structural Bioinformatics Lab and Lead 
 for Bioinformatics and Biomedical Applications at the San Diego Supercompu
 ter Center (SDSC), UC San Diego. He has previously led bioinformatics and 
 scientific computing departments at Pfizer and Agouron Pharmaceuticals. He
  led the RCSB Protein Data Bank team at UC San Diego, one of the largest o
 pen access databases in biology. In his current position at SDSC, he is in
 volved in projects to integrate cross-disciplinary data for novel COVID-19
  diagnostic and surveillance methods, and the application of knowledge gra
 phs to COVID-19 and precision medicine datasets. His research interests in
 clude the development of interactive and scalable platforms for data integ
 ration and machine learning in biomedicine and structural biology. He is a
 n advocate for open-source software development and reproducible computati
 onal research.
URL:https://support.access-ci.org/events/7167
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