Submission information
Submission Number: 45
Submission ID: 71
Submission UUID: beaef95b-0599-4f34-bd11-02985241bf5a
Submission URI: /form/project
Created: Tue, 06/16/2020 - 16:35
Completed: Tue, 06/16/2020 - 16:39
Changed: Fri, 03/05/2021 - 11:36
Remote IP address: 96.252.12.25
Submitted by: Shawn Doughty
Language: English
Is draft: No
Webform: Project
| Project Title | Creation of web based interface for BioElectric Tissue Simulation Engine (BETSE), and Genetic Algorithm for BioElectric Exploration (GABEE) |
|---|---|
| Program | |
| Project Leader | Shawn Doughty |
| shawn.doughty@tufts.edu | |
| Mobile Phone | 617-529-6831 |
| Work Phone | 617-627-5462 |
| Mentor(s) | |
| Student-facilitator(s) | |
| Mentee(s) | |
| Project Description | Creation of web based interface for BioElectric Tissue Simulation Engine (BETSE), and Genetic Algorithm for BioElectric Exploration (GABEE). Currently users access software from the command line as well as a python based graphical user interface. It is desired that typical batch and interactive actions be accessible via a web based gateway to eliminate the need for end users to install ssh, x11 or usage of command line. Potential integration frameworks include Ohio Supercomputer Center (OSC) Open-OnDemand (OOD) job submission functionality, OOD based VNC integration, FastX or frameworks such as Galaxy, Apache Airavata. |
| Project Deliverables | |
| Project Deliverables | |
| Student Research Computing Facilitator Profile | An undergraduate student familiar with python, High Performance Computing, web technologies. |
| Mentee Research Computing Profile | |
| Student Facilitator Programming Skill Level | Practical applications |
| Mentee Programming Skill Level | |
| Project Institution | Tufts University |
| Project Address | 16 Dearborn Rd. Bromfield House Somerville, Massachusetts. 02144 |
| Anchor Institution | NE-MGHPCC |
| Preferred Start Date | 12/01/2017 |
| Start as soon as possible. | |
| Project Urgency | Already behind3Start date is flexible |
| Expected Project Duration (in months) | |
| Launch Presentation | |
| Launch Presentation Date | |
| Wrap Presentation | |
| Wrap Presentation Date | |
| Project Milestones | |
| Github Contributions | |
| Planned Portal Contributions (if any) | |
| Planned Publications (if any) | |
| What will the student learn? | Interfacing with users in multiple domains, exposure to scientific domain that may be out of user's immediate area of expertise, exposure to technical domain that may be out of user’s immediate area of expertise, python, web development, workflows, scientific gateways. |
| What will the mentee learn? | |
| What will the Cyberteam program learn from this project? | |
| HPC resources needed to complete this project? | |
| Notes | |
| What is the impact on the development of the principal discipline(s) of the project? | |
| What is the impact on other disciplines? | |
| Is there an impact physical resources that form infrastructure? | |
| Is there an impact on the development of human resources for research computing? | |
| Is there an impact on institutional resources that form infrastructure? | |
| Is there an impact on information resources that form infrastructure? | |
| Is there an impact on technology transfer? | |
| Is there an impact on society beyond science and technology? | |
| Lessons Learned | |
| Overall results |