ACES: Incorporating Snakemake in HPC Workflows

Snakemake is a Python-based workflow management system for creating reproducible and scalable data science pipelines. Snakemake workflows can help manage software versioning, parameter selection, and generate interactive, shareable, browser-based reports. Students will learn best practices on how to incorporate Snakemake in their workflows on the ACES cluster and complete hands-on exercises creating simple Snakemake workflows to more complex, multi-step pipelines culminating in descriptive workflow reports. Examples in this course will utilize common bioinformatic workflows, but the concepts covered can be applied to any pipelines incorporating data science.

Read more at https://hprc.tamu.edu/training/snakemake.html