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Knowledge Base Resources

Title Category Tags Skill Level
Building the ArduPilot environment for Linux Docs profilingdata-transfergithub +10 more tags Beginner
CI Computing Module For All Learning aicomputer-visionneural-networks +17 more tags Beginner

Engagements

Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
  • Summary and objectives of the proposed experiments: 
  1. An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
  2. Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
  3. Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
  4. Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress

People with Expertise

Trey Breckenridge

Mississippi State University

Programs

Campus Champions

Roles

research computing facilitator

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Expertise

Charles Forsyth

University of California, Riverside

Programs

Campus Champions

Roles

regional facilitator, research computing facilitator

Charles Forsyth headshot

Expertise

Sapana Soni

LBNL

Programs

CCMNet

Roles

CCMNet

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Expertise

People with Interest

Samuel Siewert

California State University-Chico

Programs

ACCESS CSSN

Roles

cssn

Associate Professor - California State University Chico

Interests

Emanuela Riglioni

Programs

ACCESS CSSN

Roles

student-facilitator

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Interests

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Alexandra Lamtyugina

University of Chicago

Programs

ACCESS CSSN

Roles

student-facilitator

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Interests