Engagements
Improving alphafold performance and applications of alphafold
The project involves the improvements of the alphafold program. The projects includes two parts, improvements of the program and possible applications of it in collaboration with different researchers. The effort will be in coordination of research groups interested in the application of alphafold.
Specifically the performance improvements involves a hierarchical/diverse aspects of the code, (1)I/O, (2) databases query, (3) multithread/multi process in python, as well as GPU acceleration, and more.
CI Links
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| ACCESS HPC Workshop Series | Learning | big-data, deep-learning, machine-learning, neural-networks, tensorflow, gpu, PROFESSIONAL and WORKFORCE DEVELOPMENT, technical-training-for-hpc, training, openmpi, c, c++, fortran, openmp, programming, mpi, spark | Beginner, Intermediate |
| ACCESS KB Guide - Expanse | Documentation | composable-systems, gpu | |
| DELTA Introductory Video | video | gpu, training |
Announcements
Upcoming Events
Affinity Groups
| Name | Description | Tags | Join | |
|---|---|---|---|---|
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DELTA | DELTA is a dedicated, ACCESS-allocated resource designed by HPE and NCSA, delivering a highly capable GPU-focused compute environment for GPU and CPU workloads. Besides offering a mix of standard and… | gpu | |
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High Performance Visualization | This group first and foremost is a space for those experimenting and learning to leverage High Performance Compute environments for visualization. To be a part of this community you don't need to be… | open-ondemand, gpu, vnc | |
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Jetstream-2 | Jetstream2 is a transformative update to the NSF’s science and engineering cloud infrastructure and provides 8 petaFLOPS of supercomputing power to simplify data analysis, boost discovery, and… | cloud-open-source, cloud-storage, openstack, ai, machine-learning, tensorflow, science gateway, gpu, nvidia, cuda, jupyterhub, matlab, vnc, containers, singularity |
People with expertise
Jonathan Blanchard
Western New England University
ProgramsNortheast
Rolesstudent-facilitator, mentee
Christopher Blanton, Ph.D.
North Carolina State University at Raleigh
ProgramsCampus Champions
Rolesresearch computing facilitator, research software engineer
People with interest
Jonathan Blanchard
Western New England University
ProgramsNortheast
Rolesstudent-facilitator, mentee