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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| ACCESS HPC Workshop Series | Learning | deep-learningmachine-learningneural-networks +12 more tags | Beginner, Intermediate |
| AHPCC documentary | Docs | loginbatch-jobsslurm +4 more tags | Beginner, Intermediate |
| Benchmarking with a cross-platform open-source flow solver, PyFR | Tool | finite-element-analysisbenchmarkingparallelization +6 more tags | Intermediate |
Engagements
Recruiting
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: Recruiting
People with Expertise
Andrew Sherman
Yale University
Programs
ACCESS CSSN, Campus Champions, CAREERS
Roles
mentor, research computing facilitator, steering committee, Match SC
Expertise
Michael Puerrer
University of Rhode Island
Programs
Campus Champions, Northeast
Roles
research computing facilitator
Expertise
Daniel Howard
University Corporation for Atmospheric Research
Programs
ACCESS CSSN, Campus Champions, CCMNet, RMACC
Roles
mentor, research computing facilitator, research software engineer, CCMNet
Expertise
People with Interest
Justin Oelgoetz
Austin Peay State University
Programs
Campus Champions, CCMNet
Roles
mentor, researcher/educator, research computing facilitator, CCMNet
Interests
Interests
Cesar Sul
University of Southern California
Programs
ACCESS CSSN, Campus Champions
Roles
mentor, research computing facilitator
