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| CI Pathways: Leading the Way to Effective CI Use | 02/20/25 |
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| ACES: AI/ML TechLab on Intel PVC GPUs | 3/04/25 |
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| Attention, Transformers, and LLMs: a hands-on introduction in Pytorch | Learning | aideep-learningmachine-learning +2 more tags | Intermediate |
| DeepChem | Tool | pytorchtensorflowcomputational-chemistry | Beginner, Intermediate, Advanced |
| fast.ai | Website | aimachine-learningpytorch +1 more tags | Beginner, Intermediate, Advanced |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Expertise
Expertise
Nannan Shan
Purdue University
Programs
CCMNet, ACCESS CSSN
Roles
mentor, researcher/educator, research computing facilitator, research software engineer, cssn, Affinity Group Leader, Consultant, CCMNet
Expertise
People with Interest
Interests
Kevin Brandt
South Dakota State University
Programs
Campus Champions, Great Plains, CCMNet
Roles
representative, research computing facilitator, Affinity Group Leader, CCMNet PM, CCMNet
Interests