Affinity Groups
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Upcoming Events & Trainings
| Title | Date |
|---|---|
| NAIRR Pilot Office Hours | 4/08/25 |
| NAIRR Pilot Office Hours | 5/13/25 |
| NAIRR Pilot Office Hours | 6/10/25 |
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| A guide to pip in Python | Learning | pipsoftware-installation | Beginner, Intermediate |
| Installing Rocky Linux Operating System | Learning | unix-environmentsoftware-installation | Beginner |
| Navier-Stokes Cahn-Hilliard (NSCH) for MOOSE Framework | Website | ACCESSc++python +1 more tags | Intermediate |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Andrew Fullard
University of Denver
Programs
Campus Champions
Roles
mentor, researcher/educator, research computing facilitator, research software engineer
Expertise
Expertise
Shubha Kope
Columbia University
Programs
Campus Champions
Roles
research computing facilitator, ci systems engineer
Expertise
People with Interest
Interests
Karen Tomko
Ohio Supercomputer Center
Programs
Campus Champions
Roles
research computing facilitator, research software engineer, Affinity Group Leader
Interests
Shawn Sivy
The College of New Jersey
Programs
Campus Champions, CAREERS
Roles
research computing facilitator, ci systems engineer
