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Upcoming Events & Trainings
| Title | Date |
|---|---|
| NAIRR Pilot Office Hours | 4/08/25 |
| NAIRR Pilot Office Hours | 5/13/25 |
| NAIRR Pilot Office Hours | 6/10/25 |
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
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| A guide to pip in Python | Learning | pipsoftware-installation | Beginner, Intermediate |
| Installing Rocky Linux Operating System | Learning | unix-environmentsoftware-installation | Beginner |
| Navier-Stokes Cahn-Hilliard (NSCH) for MOOSE Framework | Website | ACCESSc++python +1 more tags | Intermediate |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Fernando Garzon
University of California, San Diego
Programs
ACCESS CSSN
Roles
mentor, research software engineer
Expertise
Chimdia Kabuo
Indiana University-Purdue University Fort Wayne
Programs
ACCESS CSSN
Roles
student-facilitator, cssn
Expertise
Sumit Saluja
Columbia University Medical Center
Programs
Campus Champions
Roles
research computing facilitator
Expertise
People with Interest
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