Neocortex Documentation
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Neocortex is a new supercomputing cluster at the Pittsburgh Supercomputing Center (PSC) that features groundbreaking AI hardware from Cerebras Systems.
Research Software Engineering Training Materials
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An ongoing collection of RSE training material, workshops, and resources. We are compiling this list as a starting point for future activities. We are especially seeking material that goes beyond basic research computing competency (e.g. what The Carpentries does so well) and is general enough to span multiple domains. Specific tools and technologies used only in one domain, or applicable to only one subset of computing (i.e. HPC) are typically too narrowly focused. When in doubt, submit it to be included or reach out and we’d be happy to discuss.
Slurm User Group Mailing List
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Moving-Lid-Driven Flow Simulation by Finite Difference Method
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The listed repository contains code written in C++ to model the flow inside a cavity with a lid moving above from left to right by discretizing incompressible N-S equations with finite difference method. For the governing equations, artificial viscosity has been considered to increase the stability. In terms of solving the resulted algebraic equation system, both the Point Jacobi Method and Symmetric Gauss Seidel methods have been used for the iteration process.
Bioinformatics Workflow Management with Nextflow
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Nextflow is an open-source, domain-specific language and workflow manager designed for the execution and coordination of scientific and data-intensive computational workflows. It was specifically created to address the challenges faced by researchers and scientists when dealing with complex and scalable computational pipelines, particularly in fields such as bioinformatics, genomics, and data analysis.
Here provided some links to start with.
Fundamentals of Cloud Computing
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An introduction to Cloud Computing
Campus Champions Home Page
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Campus Champions foster a dynamic environment for a diverse community of research computing and data professionals sharing knowledge and experience in digital research infrastructure.
Open Storage Network
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The Open Storage Network, a national resource available through the XSEDE resource allocation system, is high quality, sustainable, distributed storage cloud for the research community.
ACCESS Getting Started Quick-Guide
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A step-by-step guide to getting your first allocation for Access computing and storage resources.
Better Scientific Software (BSSw)
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The Better Scientific Software (BSSw) project provides a community to collaborate and learn about best practices in scientific software development. Software—the foundation of discovery in computational science & engineering—faces increasing complexity in computational models and computer architectures. BSSw provides a central hub for the community to address pressing challenges in software productivity, quality, and sustainability.
Mechanism and Implementation of Various MPI Libraries
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There is a detailed explanation about communication routines and managing methods of different MPI libraries, as well as several exercises designed for users to get familiar with the implementation of MPI build process.
Intro to Machine Learning on HPC
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This tutorial introduces machine learning on high performance computing (HPC) clusters. While it focuses on the HPC clusters at The University of Arizona, the content is generic enough that it can be used by students from other institutions.
CUDA Toolkit Documentation
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NVIDIA CUDA Toolkit Documentation: If you are working with GPUs in HPC, the NVIDIA CUDA Toolkit is essential. You can access the CUDA Toolkit documentation, including programming guides and API references, at this provided website
Representation Learning in Deep Learning
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Representation learning is a fundamental concept in machine learning and artificial intelligence, particularly in the field of deep learning. At its core, representation learning involves the process of transforming raw data into a form that is more suitable for a specific task or learning objective. This transformation aims to extract meaningful and informative features or representations from the data, which can then be used for various tasks like classification, clustering, regression, and more.
Handwritten Digits Tutorial in PyTorch
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This tutorial is essentially the "hello world" of image recognition and feed-forward neural network (using PyTorch). Using the MNIST database (filled within images of handwritten digits), the tutorial will instruct how to build a feed-forward neural network that can recognize handwritten digits. A solid understanding of feed-forward and back-propagation is recommended.
RMACC Website
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Rocky Mountain Advanced Computing Consortium Website
Official Documentation for PyTorch and NumPy
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The official documentation for PyTorch, a machine learning tensor-based framework, and NumPy, which allows for support for ndarrays which is useful to make tensors when implementing NNs. Both libraries can be installed with pip.
Jetstream Home
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Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research regardless of your project’s scale—even if you have limited experience with supercomputing systems.Cloud-based and on-demand, the 24/7 system includes discipline-specific apps. You can even create virtual machines that look and feel like your lab workstation or home machine, with thousands of times the computing power.
Regulated Research Community of Practice
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The daily news clearly shows the increasing threat to safety and privacy of data, personal as well as intellectual property. While the requirements such as DFARS 7012, HIPAA, and Cybersecurity Maturity Model Certification (CMMC) improve the consistency of data handling between agencies and contractors and grantees, it leaves academic institutions to figure out how to meet such requirements in a cost-effective way that fits the research and education mission of the institution. Most institutions, agencies, and companies act in isolation with one-off contract language to address data security and safeguarding concerns. Even though cybersecurity has a clear and uniform goal of protecting data, a onesize solution does not fit all academic institutions.
By supporting this community with development of a community strategic roadmap, regular discussions and workshops, and a repository of generalized and specific resources for handling regulated research programs RRCoP lowers the barrier to entry for institutions handling new regulations.
EasyBuild Documentation
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EasyBuild is a software installation framework that allows administrators to easily build and install software on high-performance computing (HPC) systems. It supports a wide range of software packages, toolchains, and compilers.
Supported software are found in the EasyConfigs repository, one of several resositories in EasyBuild project.
Introductory Tutorial to Numpy and Pandas for Data Analysis
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In this tutorial, I present an overview with many examples of the use of Numpy and Pandas for data analysis. Beginners in the field of data analysis can find It incredibly helpful, and at the same time, anyone who already has experience in data analysis and needs a refresher can find value in it. I discuss the use of Numpy for analyzing 1D and 2D multidimensional data and an introduction on using Pandas to manipulate CSV files.
Neurodesk
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Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data. Analysis pipelines for neuroimaging data typically rely on specific versions of packages and software, and are dependent on their native operating system. These dependencies mean that a working analysis pipeline may fail or produce different results on a new computer, or even on the same computer after a software update. Neurodesk provides a platform in which anyone, anywhere, using any computer can reproduce your original research findings given the original data and analysis code.
Long Tales of Science: A podcast about women in HPC
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A series of interviews with women in the HPC community
ACCESS KB Guide - Anvil
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Purdue University is the home of Anvil, a powerful supercomputer that provides advanced computing capabilities to support a wide range of computational and data-intensive research spanning from traditional high-performance computing to modern artificial intelligence applications.
A survey on datasets for fairness-aware machine learning
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The research paper provides an overview of various datasets that have been used to study fairness in machine learning. It discusses the characteristics of these datasets, such as their size, diversity, and the fairness-related challenges they address. The paper also examines the different domains and applications covered by these datasets.