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Knowledge Base Resources

These resources are contributed by researchers, facilitators, engineers, and HPC admins. Please upvote resources you find useful!
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Topics

  • machine-learning (50)
  • ai (45)
  • training (41)
  • data-analysis (40)
  • deep-learning (28)
  • documentation (28)
  • big-data (26)
  • neural-networks (24)
  • workforce-development (21)
  • professional-development (18)
  • visualization (18)
  • parallelization (16)
  • community-outreach (14)
  • programming (14)
  • image-processing (13)
  • cybersecurity (12)
  • gpu (12)
  • r (12)
  • pytorch (11)
  • slurm (10)
  • c (9)
  • cloud-computing (9)
  • compiling (9)
  • mpi (9)
  • plotting (9)
  • administering-hpc (8)

Topics

  • machine-learning (50)
  • ai (45)
  • training (41)
  • data-analysis (40)
  • deep-learning (28)
  • documentation (28)
  • big-data (26)
  • neural-networks (24)
  • workforce-development (21)
  • professional-development (18)
  • visualization (18)
  • parallelization (16)
  • community-outreach (14)
  • programming (14)
  • image-processing (13)
  • cybersecurity (12)
  • gpu (12)
  • r (12)
  • pytorch (11)
  • slurm (10)
  • c (9)
  • cloud-computing (9)
  • compiling (9)
  • mpi (9)
  • plotting (9)
  • administering-hpc (8)

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Official Documentation for PyTorch and NumPy
0
  • Official PyTorch Documentation
  • Official NumPy Documentation
The official documentation for PyTorch, a machine learning tensor-based framework, and NumPy, which allows for support for ndarrays which is useful to make tensors when implementing NNs. Both libraries can be installed with pip.
deep-learningneural-networkspytorchpython
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Type
documentation
Level
Beginner
Introductory Python Lecture Series
0
  • Python Handbook Series
A lecture and notes with the goal of teaching introductory python. Starting by understanding how to download and start using python, then expanding to basic syntax for lists, arrays, loops, and methods.
documentationprogrammingpython
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Type
learning
Level
Beginner
DAGMan for orchestrating complex workflows on HTC resources (High Throughput Computing)
0
  • DAGMan
  • DAGMan Workflows
DAGMan (Directed Acyclic Graph Manager) is a meta-scheduler for HTCondor. It manages dependencies between jobs at a higher level than the HTCondor Scheduler. It is a workflow management system developed by the High-Throughput Computing (HTC) community, specifically for managing large-scale scientific computations and data analysis tasks. It enables users to define complex workflows as directed acyclic graphs (DAGs). In a DAG, nodes represent individual computational tasks, and the directed edges represent dependencies between the tasks. DAGMan manages the execution of these tasks and ensures that they are executed in the correct order based on their dependencies. The primary purpose of DAGMan is to simplify the management of large-scale computations that consist of numerous interdependent tasks. By defining the dependencies between tasks in a DAG, users can easily express the order of execution and allow DAGMan to handle the scheduling and coordination of the tasks. This simplifies the development and execution of complex scientific workflows, making it easier to manage and track the progress of computations.
open-science-grid
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Type
tool
Level
Intermediate, Advanced
C Programming
0
  • C Programming Notes
"These notes are part of the UW Experimental College course on Introductory C Programming. They are based on notes prepared (beginning in Spring, 1995) to supplement the book The C Programming Language, by Brian Kernighan and Dennis Ritchie, or K&R as the book and its authors are affectionately known. (The second edition was published in 1988 by Prentice-Hall, ISBN 0-13-110362-8.) These notes are now (as of Winter, 1995-6) intended to be stand-alone, although the sections are still cross-referenced to those of K&R, for the reader who wants to pursue a more in-depth exposition." C is a low-level programming language that provides a deep understanding of how a computer's memory and hardware work. This knowledge can be valuable when optimizing apps for performance or when dealing with resource-constrained environments.C is often used as the foundation for creating cross-platform libraries and frameworks. Learning C can allow you to develop libraries that can be used across different platforms, including iOS, Android, and desktop environments.
cc++compilingprogrammingprogramming-best-practices
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Type
learning
Level
Beginner
GIS: Projections and their distortions
0
  • Map Projections
In GIS, projections are helpful to take something plotted on a globe and convert it to a flat map that we can print or show on a screen. Unfortunately it also introduces distortions to the objects and features on the map. This not only distorts the objects visually, but the results for any spatial attribute calculations will also reflect this distortion (such as distance and area ). Below is a link to a quick primer on projections, types of distortions that can occur, and suggestions on how to choose a correct projection for your work.
gis
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Type
learning
Level
Beginner, Intermediate
AWS Tutorial For Beginners
0
  • AWS Tutorial For Beginners
An AWS Tutorial for Beginners is a course that teaches the basics of Amazon Web Services (AWS), a cloud computing platform that offers a wide range of services, including compute, storage, networking, databases, analytics, machine learning, and artificial intelligence.
aws
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Type
video_link
Level
Beginner, Intermediate
GPU Acceleration in Python
0
  • GPU Acceleration in Python
This tutorial explains how to use Python for GPU acceleration with libraries like CuPy, PyOpenCL, and PyCUDA. It shows how these libraries can speed up tasks like array operations and matrix multiplication by using the GPU. Examples include replacing NumPy with CuPy for large datasets and using PyOpenCL or PyCUDA for more control with custom GPU kernels. It focuses on practical steps to integrate GPU acceleration into Python programs.
machine-learningbig-datadata-analysisoptimizationparallelizationgpucudapython
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Type
learning
Level
Beginner, Intermediate
Educause HEISC-800-171 Community Group
0
  • Educause HEISC-800-171 Community Group
The purpose of this group is to provide a forum to discuss NIST 800-171 compliance. Participants are encouraged to collaborate and share effective practices and resources that help higher education institutions prepare for and comply with the NIST 800-171 standard as it relates to Federal Student Aid (FSA), CMMC, DFARS, NIH, and NSF activities.
cybersecurity
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Type
website
Level
Beginner, Intermediate, Advanced
Framework to help in scaling Machine Learning/Deep Learning/AI/NLP Models to Web Application level
0
  • Framework to help in scaling Machine Learning/Deep Learning/AI/NLP Models to Web Application level
This framework will help in scaling Machine Learning/Deep Learning/Artificial Intelligence/Natural Language Processing Models to Web Application level almost without any time.
aideep-learningmachine-learningneural-networks
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Type
learning
Level
Intermediate
The Official Documentation of Pandas
0
  • pandas documentation
Pandas is one of the most essential Python libraries for data analysis and manipulation. It provides high-performance, easy-to-use data structures, and data analysis tools for the Python programming language. The official documentation serves as an in-depth guide to using this powerful tool including explanations and examples.
plottingvisualization
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Type
documentation
Level
Beginner, Intermediate
Big Data Research at the University of Colorado Boulder
0
  • Big Data Research at the University of Colorado Boulder
Background: Big data, defined as having high volume, complexity or velocity, have the potential to greatly accelerate research discovery. Such data can be challenging to work with and require research support and training to address technical and ethical challenges surrounding big data collection, analysis, and publication. Methods: The present study was conducted via a series of semi-structured interviews to assess big data methodologies employed by CU Boulder researchers across a broad sample of disciplines, with the goal of illuminating how they conduct their research; identifying challenges and needs; and providing recommendations for addressing them. Findings: Key results and conclusions from the study indicate: gaps in awareness of existing big data services provided by CU Boulder; open questions surrounding big data ethics, security and privacy issues; a need for clarity on how to attribute credit for big data research; and a preference for a variety of training options to support big data research.
big-data
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Type
documentation
Level
Beginner
Introduction to Probabilistic Graphical Models
0
  • https://ermongroup.github.io/cs228-notes/
This website summarizes the notes of Stanford's introductory course on probabilistic graphical models. It starts from the very basics and concludes by explaining from first principles the variational auto-encoder, an important probabilistic model that is also one of the most influential recent results in deep learning.
aimachine-learning
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Type
learning
Level
Beginner, Intermediate
Neural Networks in Julia
0
  • Neural Networks in Julia using Flux.jl
Making a neural network has never been easier! The following link directs users to the Flux.jl package, the easiest way of programming a neural network using the Julia programming language. Julia is the fastest growing software language for AI/ML and this package provides a faster alternative to Python's TensorFlow and PyTorch with a 100% Julia native programming and GPU support.
aideep-learningmachine-learningneural-networksjulia
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Type
tool
Level
Intermediate, Advanced
NCSA HPC-Moodle
0
  • NCSA HPC-Moodle
Self-paced tutorials on high-end computing topics such as parallel computing, multi-core performance, and performance tools. Some of the tutorials also offer digital badges.
trainingworkforce-development
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Type
learning
Level
Beginner, Intermediate, Advanced
Raftlib: Open Source library for concurrent data processing pipelines
0
  • RaftLib
Raftlib is an open-source C++ Library that provides a framework for implementing parallel and concurrent data processing pipelines. It is designed to simplify the development of high-performance data processing applications by abstracting away the complexities of parallelism, concurrency, and data flow management. It enables stream/data-flow parallel computation by linking parallel compute kernels together using simple right shift operators, similar to C++ streams for string manipulation. RaftLib eliminates the need for explicit usage of traditional threading libraries such as pthreads, std::thread, or OpenMP, which can lead to non-deterministic behavior when misused.
parallelizationpthreadsopenmp
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tool
Level
Intermediate, Advanced
fast.ai
0
  • fast.ai Homepage
Fastai offers many tools to people working with machine learning and artifical intelligence including tutorials on PyTorch in addition to their own library built on PyTorch, news articles, and other resources to dive into this realm.
aimachine-learningpytorchtraining
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Type
website
Level
Beginner, Intermediate, Advanced
MPI Resources
0
  • Easy MPI Tutorial
  • Open MPI documentation
Workshop for beginners and intermediate students in MPI which includes helpful exercises. Open MPI documentation.
parallelizationmpi
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Type
learning
Level
Beginner, Intermediate
Workshop on LangChain and GPT
0
  • Zoom Recording of Workshop on LangChain and GPT
  • Code
  • Data

This interactive workshop introduces participants to the power of GPT and LangChain for solving domain-specific scientific challenges. Participants will learn how to use these tools to address real research problems, such as predicting molecular properties or analyzing large-scale datasets in genomics. Through guided tutorials and hands-on project development, attendees will leave with a working application tailored to their own research needs.

aillmdata-analysispython
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video_link
Level
Beginner
Probabilistic Semantic Data Association for Collaborative Human-Robot Sensing
0
  • Probabilistic Semantic Data Association for Collaborative Human-Robot Sensing
Humans cannot always be treated as oracles for collaborative sensing. Robots thus need to maintain beliefs over unknown world states when receiving semantic data from humans, as well as account for possible discrepancies between human-provided data and these beliefs. To this end, this paper introduces the problem of semantic data association (SDA) in relation to conventional data association problems for sensor fusion. It then, develops a novel probabilistic semantic data association (PSDA) algorithm to rigorously address SDA in general settings. Simulations of a multi-object search task show that PSDA enables robust collaborative state estimation under a wide range of conditions.
aimachine-learning
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Type
documentation
Level
Advanced
Numpy - a Python Library
0
  • NumPY Docs
Numpy is a python package that leverages types and compiled C code to make many math operations in Python efficient. It is especially useful for matrix manipulation and operations.
documentationbig-datadata-analysisdeep-learningopencvpytorchtensorflowdata-science
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tool
Level
Beginner, Intermediate
Master's in Data Science Program Guide - TechGuide
0
  • Masters in Data Science Program Guide
A master’s degree in data science helps prepare professionals to take the next career step. This article will focus primarily on data science, a graduate degree in this field, and a data scientist or data analyst career. With many employers preferring a master’s degree in data science for those seeking to fill roles as data scientists or analysts, we will discuss the data science master’s degree in detail.
big-datadata-analysisdata-science
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Type
website
Level
Advanced
Jetstream2 Status
0
  • Jetstream2 Status
Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research regardless of your project’s scale—even if you have limited experience with supercomputing systems.Cloud-based and on-demand, the 24/7 system includes discipline-specific apps. You can even create virtual machines that look and feel like your lab workstation or home machine, with thousands of times the computing power.
jetstream
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website
Level
Beginner, Intermediate, Advanced
MATLAB bioinformatics toolbox
0
  • https://www.mathworks.com/products/bioinfo.html
Bioinformatics Toolbox provides algorithms and apps for Next Generation Sequencing (NGS), microarray analysis, mass spectrometry, and gene ontology. Using toolbox functions, you can read genomic and proteomic data from standard file formats such as SAM, FASTA, CEL, and CDF, as well as from online databases such as the NCBI Gene Expression Omnibus and GenBank.
visualizationdata-analysisbioinformaticsgenomicsmatlab
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tool
Level
Beginner, Intermediate, Advanced
ACCESS Events and Training
0
  • Events and Training
Listing of upcoming ACCESS related events and training activities.
professional-developmenttrainingworkforce-development
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Type
website
Level
Beginner
CUDA Toolkit Documentation
0
  • CUDA Toolkit Documentation
NVIDIA CUDA Toolkit Documentation: If you are working with GPUs in HPC, the NVIDIA CUDA Toolkit is essential. You can access the CUDA Toolkit documentation, including programming guides and API references, at this provided website
documentationcc++fortranpython
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Type
documentation
Level
Intermediate, Advanced

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