The Carpentries
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We teach foundational coding and data science skills to researchers worldwide.
Open OnDemand
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Open OnDemand is an easy-to-use web portal that lets students, researchers, and industry professionals use supercomputers from anywhere. It is installed on supercomputing resources at hundreds of sites. By eliminating the need for client software or command-line interface, Open OnDemand empowers users of all skill levels and significantly speeds up the time to their first computing.
HPC Carpentry
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An HPC focused Carpentry community. Trainings include: HPC fundamentals, python, chapel, LAMMPS, parallelization with python, scaling studies, etc.
The Chronicle of Evidence-Based Mentoring
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This is a great mentoring resource and has many articles related to mentoring. It is a one-stop shop for mentoring, and at the bottom, there are tags based on topics, and interested users can pick and choose articles and resources on different types of mentorship.
Enhanced Sampling for MD simulations
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RRCoP Resources Page
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Very helpful list of Regulated Research Community of Practice's collaborating communities.
TensorFlow for Deep Neural Networks
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TensorFlow is a powerful framework for Deep Learning, developed by google. This specifically is their python package, which is easy to use and can be used to train incredibly powerful models.
Termius - Modern ssh platform
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**Termius: The Modern SSH Client for 2023**
Termius is the future-facing SSH client that's redefining remote server access in 2023. Designed for ease and efficiency, Termius offers a seamless connection experience across all devices, be it mobile or desktop. Gone are the days of re-inputting IP addresses, ports, and passwords; with Termius, one-click connectivity is the new norm.
**How Termius Elevates Remote Server Access:**
1. **One-Click Connectivity:** Save the hassle of remembering and re-entering connection details. Termius provides an immediate connection to your infrastructure with a single click.
2. **Synchronized Across Devices:** Termius ensures that your data, connection settings, and preferences are consistent across all your devices, from mobile to desktop.
3. **Unparalleled Security:** With the Cloud Vault feature, users can securely store their data in an encrypted environment, accessible only from their specific devices. Shared vaults allow for safe connection sharing within teams.
4. **AI-Powered Terminal Experience:** Advanced AI-driven autocomplete means users can input command descriptions, and Termius will swiftly convert them into accurate bash commands, simplifying and enhancing the terminal interaction.
5. **Collaborative Troubleshooting:** Share terminal sessions with teammates, facilitating cooperative problem-solving or knowledge sharing. No additional server-side installations needed.
6. **Automation and Snippets:** Streamline routine processes with the ability to save and run frequently used shell scripts. Sharing these Snippets with your team can lead to increased productivity and fewer manual errors.
7. **All-Device Compatibility:** Whether on iPad, iPhone, Android, macOS, Windows, or Linux, Termius ensures a consistent and fluid experience. The platform's synchronization capability means you're always ready to respond swiftly, irrespective of the device in use.
For professionals and businesses aiming for top-notch server access efficiency, Termius is the gold standard in 2023. Experience the revolution in SSH connectivity and optimize your workflow with Termius.
Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks
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This repository contains information about Jupyter Widgets and how they can be used to develop interactive workflows, data dashboards, and web applications that can be run on HPC systems and science gateways. Easy to build web applications are not only useful for scientists. They can also be used by software engineers and system admins who want to quickly create tools tools for file management and more!
MATLAB with other Programming Languages
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MATLAB is a really useful tool for data analysis among other computational work. This tutorial takes you through using MATLAB with other programming languages including C, C++, Fortran, Java, and Python.
Expanse Home Page
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Expanse at SDSC is a cluster designed by Dell and SDSC delivering 5.16 peak petaflops, and offers Composable Systems and Cloud Bursting.
Charliecloud User Group
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Announcements for for users and developers of Charliecloud, which provides lightweight user-defined software stacks for high-performance computing.
Research Software Engineering Training Materials
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An ongoing collection of RSE training material, workshops, and resources. We are compiling this list as a starting point for future activities. We are especially seeking material that goes beyond basic research computing competency (e.g. what The Carpentries does so well) and is general enough to span multiple domains. Specific tools and technologies used only in one domain, or applicable to only one subset of computing (i.e. HPC) are typically too narrowly focused. When in doubt, submit it to be included or reach out and we’d be happy to discuss.
ACCESS Resource Advisor
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A web-based tool to help researchers identify appropriate ACCESS resources for their project.
Open Storage Network
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The Open Storage Network, a national resource available through the XSEDE resource allocation system, is high quality, sustainable, distributed storage cloud for the research community.
Raftlib: Open Source library for concurrent data processing pipelines
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Raftlib is an open-source C++ Library that provides a framework for implementing parallel and concurrent data processing pipelines. It is designed to simplify the development of high-performance data processing applications by abstracting away the complexities of parallelism, concurrency, and data flow management.
It enables stream/data-flow parallel computation by linking parallel compute kernels together using simple right shift operators, similar to C++ streams for string manipulation. RaftLib eliminates the need for explicit usage of traditional threading libraries such as pthreads, std::thread, or OpenMP, which can lead to non-deterministic behavior when misused.
Fundamentals of Cloud Computing
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An introduction to Cloud Computing
Better Scientific Software (BSSw)
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The Better Scientific Software (BSSw) project provides a community to collaborate and learn about best practices in scientific software development. Software—the foundation of discovery in computational science & engineering—faces increasing complexity in computational models and computer architectures. BSSw provides a central hub for the community to address pressing challenges in software productivity, quality, and sustainability.
OnShape FeatureScripts: Custom features for everyone
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OnShape FeatureScripts allow users to create their own features via OnShape's programming language. The user can make these as simple or complex as they need, and they can save tons of time for heavy OnShape users or complex projects!
ACCESS Getting Started Quick-Guide
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A step-by-step guide to getting your first allocation for Access computing and storage resources.
Mechanism and Implementation of Various MPI Libraries
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There is a detailed explanation about communication routines and managing methods of different MPI libraries, as well as several exercises designed for users to get familiar with the implementation of MPI build process.
AI powered VsCode Editor
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**Cursor: The AI-Powered Code Editor**
Cursor is a cutting-edge, AI-first code editor designed to revolutionize the way developers write, debug, and understand code. Built upon the premise of pair-programming with artificial intelligence, Cursor harnesses the capabilities of advanced AI models to offer real-time coding assistance, bug detection, and code generation.
**How Cursor Benefits High-Performance Computing (HPC) Work:**
1. **Efficient Code Development:** With AI-assisted code generation, researchers and developers in the HPC realm can quickly write optimized code for simulations, data processing, or modeling tasks, reducing the time to deployment.
2. **Debugging Assistance:** Handling complex datasets and simulations often lead to intricate bugs. Cursor's capability to automatically investigate errors and determine root causes can save crucial time in the HPC workflow.
3. **Tailored Code Suggestions:** Cursor's AI provides context-specific code suggestions by understanding the entire codebase. For HPC applications where performance is paramount, this means receiving recommendations that align with optimization goals.
4. **Improved Code Quality:** With AI-driven bug scanning and linter checks, Cursor ensures that HPC codes are not only fast but also robust and free of common errors.
5. **Easy Integration:** Being a fork of VSCode, Cursor allows seamless migration, ensuring that developers working in HPC can swiftly integrate their existing VSCode setups and extensions.
In essence, for HPC tasks that demand speed, precision, and robustness, Cursor acts as an invaluable co-pilot, guiding developers towards efficient and optimized coding solutions.
It is free if you provide your own OPEN AI API KEY.
OpenMP and Multithreaded Jobs in GRASS
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Techniques and support for multithreaded geospatial data processing in GRASS.
Handwritten Digits Tutorial in PyTorch
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This tutorial is essentially the "hello world" of image recognition and feed-forward neural network (using PyTorch). Using the MNIST database (filled within images of handwritten digits), the tutorial will instruct how to build a feed-forward neural network that can recognize handwritten digits. A solid understanding of feed-forward and back-propagation is recommended.
RMACC Website
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Rocky Mountain Advanced Computing Consortium Website