Use these links “vetted” by the community. Additional CI links are always welcome.
| Votes | Title | Description | Category | Tags | Skill Level | Affinity Group |
|---|---|---|---|---|---|---|
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Neurostars | A question and answer forum for neuroscience researchers, infrastructure providers and software… more | Website | documentationimage-processingdata-sharingmore | 
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Paraview UArizona HPC links (advanced) | These links take you to visualization resources supported by the University of Arizona's HPC… more | Docs | visualization | 
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A guide to pip in Python | pip stands for "pip installs packages". It's the go-to package manager for Python,… more | Learning | pipsoftware-installation | 
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0
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A visual introduction to Gaussian Belief Propagation | This website is an interactive introduction to Gaussian Belief Propagation (GBP). A probabilistic… more | Website | aimachine-learning |
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0
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ACCESS - Video for new ACCESS users | This is a short video on how to exchange ACCESS credits and connect to Jetstream 2 (please note… more | Video | access-accountACCESS-creditsexchange-requestmore | 
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ACCESS Campus Champion Example Allocation | ACCESS requests proposals to be written following NSF proposal guidelines. The link provides an… more | Learning | allocations-proposalproposal-requestresearch-facilitation |
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ACCESS Guide (originally given at Duke OIT) | A guide for Duke OIT on how to advise users on using ACCESS and allocation credits to jetstream 2… more | Docs | ACCESS-creditsadding-usersallocation-managementmore |
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ACCESS HPC Workshop Series | Monthly workshops sponsored by ACCESS on a variety of HPC topics organized by Pittsburgh… more | Learning | big-datadeep-learningmachine-learningmore |
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AI Institutes Cyberinfrastructure |
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ACCESS KB Guide - Anvil | Purdue University is the home of Anvil, a powerful supercomputer that provides advanced computing… more | Docs | anvil |
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Anvil |
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ACCESS KB Guide - DELTA | NCSA is the home of Delta, a computing and data resource that balances cutting-edge graphics… more | Docs | delta |
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DELTA, AI Institutes Cyberinfrastructure |
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ACCESS KB Guide - Expanse | Expanse at SDSC is a cluster designed by Dell and SDSC delivering 5.16 peak petaflops, and offers… more | Docs | expansecomposable-systemsgpu |
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Expanse |
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ACCESS Pegasus Documentation | Docs | pegasus |
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Pegasus | |
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ACCESS Support Portal | Website | affinity-groupopen-ondemandpegasusmore |
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ACCESS Support, AI Institutes Cyberinfrastructure | |
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ACES: Charliecloud Containers for Scientific Workflows (Tutorial) | This tutorial introduces the use of Containers using the Charliecloud software suite. This tutorial… more | Learning | ACESTAMUSCRATCHmore |
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Active inference textbook | This textbook is the first comprehensive treatment of active inference, an integrative perspective… more | Learning | aimachine-learningneural-networks |
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Advanced Compilers: The Self-Guided Online Course | This is a self guided online course on compilers. The topics covered throughout the course include… more | Learning | optimizationparallelizationtrainingmore | 
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Advanced Mathematical Optimization Techniques | Mathematical optimization deals with the problem of finding numerically minimums or maximums of a… more | Learning | optimizationpython |
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AHPCC documentary | This link is a documentary website to use AHPCC. | Docs | loginbatch-jobsslurmmore |
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AI for improved HPC research - Cursor and Termius - Powerpoint | These slides provide an introduction on how Termius and Cursor, two new and freemium apps that use… more | Slides | documentationaimachine-learningmore |
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AI powered VsCode Editor | **Cursor: The AI-Powered Code Editor** Cursor is a cutting-edge, AI-first code… more |
Tool | aimachine-learningworkflowmore |
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AI/ML TechLab - Accelerating AI/ML Workflows on a Composable Cyberinfrastructure | This technology lab contains a set of sessions to help a new user start an AI project on the ACES… more | Docs | ACESdocumentationTAMUmore | 
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An Introduction to the Julia Programming Language | The Julia Programming Language is one of the fastest growing software languages for AI/ML… more | Learning | aidata-analysismachine-learningmore |
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Anvil Home Page | Purdue University is the home of Anvil, a powerful supercomputer that provides advanced computing… more | Website | anvil |
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Anvil |
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Application Fundamentals (Android) | The provided text discusses various aspects of Android app development fundamentals. It covers key… more | Website | licenseapiprogrammingmore |
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Applications of Machine Learning in Engineering and Parameter Tuning Tutorial | Slides for a tutorial on Machine Learning applications in Engineering and parameter tuning given at… more | Learning | data-analysismachine-learningpython |
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votes
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Ask.CI Q&A Platform for Research Computing | Website | resourcesprogramming-best-practices |
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Ask.CI Moderators | |
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Astronomy data analysis with astropy | Astropy is a community-driven package that offers core functionalities needed for astrophysical… more | Learning | visualizationimage-processingastrophysics |
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Automated Machine Learning Book | The authoritative book on automated machine learning, which allows practitioners without ML… more | Learning | aidata-analysisdeep-learningmore |
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Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools) | A curated list of awesome Jupyter widget packages and projects for building interactive… more | Learning | aicomputer-graphicsplottingmore |
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AWS Tutorial For Beginners | An AWS Tutorial for Beginners is a course that teaches the basics of Amazon Web Services (AWS), a… more | Video | aws |
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Bash shell tutorial | Training materials for using the bash (and zsh) shell. | Learning | bash |
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Beautiful Soup - Simple Python Web Scraping | This package lets you easily scrape websites and extract information based on html tags and various… more | Tool | documentationaibig-datamore |
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Benchmarking with a cross-platform open-source flow solver, PyFR | What is PyFR and how does it solve fluid flow problems? PyFR is an open-source Computational… more |
Tool | finite-element-analysisbenchmarkingparallelizationmore |
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0
votes
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Better Scientific Software (BSSw) | The Better Scientific Software (BSSw) project provides a community to collaborate and learn about… more | Website | community-outreachproject-managementresearch-facilitationmore |
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0
votes
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Bioinformatics Workflow Management with Nextflow | Nextflow is an open-source, domain-specific language and workflow manager designed for the… more | Docs | cloud-computingparallelizationdata-managementmore |
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0
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Biopython Tutorial | The Biopython Tutorial and Cookbook website is a dedicated online resource for users in the field… more | Learning | bioinformaticsgenomicspython |
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0
votes
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Bridges-2 Home Page | Landing Page for Bridges-2 information | Website | bridges-2 |
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Bridges-2 |
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Building Anaconda Navigator applications | This tutorial explains how to create an Anaconda Navigator Application (app) for JupyterLab. It is… more | Tool | compilingcondaprogrammingmore |
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Building the ArduPilot environment for Linux | This article provides instructions for building AirSim, an open-source simulator for autonomous… more | Docs | setupprofilingdata-transfermore |
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C Programming | "These notes are part of the UW Experimental College course on Introductory C Programming.… more | Learning | cc++compilingmore |
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Campus Champions Home Page | Campus Champions foster a dynamic environment for a diverse community of research computing and… more | Website | community-outreachprofessional-development |
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Campus Champions |
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CaRCC Data Facing Track | The Data-Facing Track of the People Network brings together people from research computing groups,… more | Website | data-analysisdata-access-protocolsdata-lifecyclemore |
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Large Data Sets |
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Chameleon | Chameleon is an NSF-funded testbed system for Computer Science experimentation. It is designed to… more | Docs | data-sharingdata-reproducibility |
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Charliecloud User Group | Announcements for for users and developers of Charliecloud, which provides lightweight user-defined… more | Mailing List | containers |
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0
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CHARMM Links to Install, Run, and Troubleshoot MD Simulations | CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a widely distributed molecular simulation… more | Learning | charmmmolecular-dynamicsnamdmore |
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CMake Tutorials | CMake is an open-source tool used to manage the build process in operating systems. This tutorial… more | Learning | trainingcompiling |
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Conda | Conda is a popular package management system. This tutorial introduces you to Conda and walks you… more | Tool | anacondacondapython |
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0
votes
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ConnectCI | Connect.Cybinfrastructure is a family of portals, each representing a program that is serving a… more | Website | community-outreach |
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Connect CI Alliance |
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votes
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Containerization Explained | Containerization is a software development method in which applications are packaged into standard… more | Video | containers |
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vote
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Cornell Virtual Workshop | Comprehensive training resource for high performance computing topics. Current tags are just a… more | Learning | performance-tuningparallelizationfile-transfermore |
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0
votes
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Creating a Mobile Application | Goes through in detail on how to build an application that can run on Android and IOS devices,… more | Website | githubcompilingprogramming |
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0
votes
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CUDA Toolkit Documentation | NVIDIA CUDA Toolkit Documentation: If you are working with GPUs in HPC, the NVIDIA CUDA Toolkit is… more | Docs | documentationcc++more |
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0
votes
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Cyber Security | learning cybersecurity is crucial for personal protection, safeguarding digital assets, financial… more | Learning | trainingdata-securitycybersecuritymore |
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0
votes
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DAGMan for orchestrating complex workflows on HTC resources (High Throughput Computing) | DAGMan (Directed Acyclic Graph Manager) is a meta-scheduler for HTCondor. It manages dependencies… more | Tool | open-science-grid |
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0
votes
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DARWIN Documentation Pages | DARWIN (Delaware Advanced Research Workforce and Innovation Network) is a big data and high… more | Docs | darwinbig-data |
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DARWIN |
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votes
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Data Analysis with R for Educators | This webinar series is an orientation to R. We start with an overview of R’s history and place in… more | Video | data-analysisdata-sciencepsychologymore |
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0
votes
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Data Imputation Methods for Climate Data and Mortality Data | This slices and videos introduced how to use K-Nearest-Neighbors method to impute climate data and… more | Video | allocation-valuedocumentationaimore |
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0
votes
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Data Visualization Tools for Julia | Plots.jl is the most widely used plotting library for the Julia programming language. It's… more | Tool | plottingvisualizationjulia |
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1
vote
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Data Visualization tools for Python | Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations… more | Docs | documentationpython |
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0
votes
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Data visualization with Matplotlib | Data visualization is a critical aspect of data analysis. It allows for a clear and concise… more | Website | plottingvisualization |
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1
vote
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DeapSECURE – Data-Enabled Advanced Computational Training Platform for Cybersecurity Research and Education | DeapSECURE is a training program to infuse high-performance computational techniques into… more | Learning | aivisualizationbig-datamore |
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0
votes
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DeepChem | DeepChem is an open-source library built on TensorFlow and PyTorch. It is helpful in applying… more | Tool | pytorchtensorflowcomputational-chemistry |
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0
votes
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DELTA Introductory Video | Introductory video about DELTA. Speaker Tim Boerner, Senior Assistant Director, NCSA | video | deltagputraining |
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DELTA |
0
votes
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Developer Stories Podcast | As developers, we get excited to think about challenging problems. When you ask us what we are… more | Website | community-outreachprofessional-developmenttechnical-training-for-hpcmore |
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0
votes
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Discover Data Science | Discover Data Science is all about making connections between prospective students and educational… more | Website | data-analysisworkforce-development |
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0
votes
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Displaying Scientific Data with Tableau | Tableau is a popular and capable software product for creating charts that present data and… more | Video | big-datadata-analysistechnical-training-for-hpcmore |
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0
votes
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Docker - Containerized, reproducible workflows | Docker allows for containerization of any task - basically a smaller, scalable version of a virtual… more | Tool | documentationcloud-computingdeep-learning |
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0
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Docker Container Library | The Docker container library, commonly known as Docker Hub, is a vast repository that hosts a… more | Tool | documentationcloud-computingcloud-open-sourcemore | ||
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votes
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Docker Tutorial for Beginners | A Docker tutorial for beginners is a course that teaches the basics of Docker, a containerization… more | Video | docker |
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0
votes
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EasyBuild Documentation | EasyBuild is a software installation framework that allows administrators to easily build and… more | Docs | easybuild |
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0
votes
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Educause HEISC-800-171 Community Group | The purpose of this group is to provide a forum to discuss NIST 800-171 compliance. Participants… more | Website | cybersecurity |
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Cybersecurity |
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votes
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Examples of code using JSON nlohmann header only Library for C++ | This code showcases how to work with the header-only nlohmann JSON library for C++. In order to… more | Learning | c++ |
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0
votes
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Examples of Thrust code for GPU Parallelization | Some examples for writing Thrust code. To compile, download the CUDA compiler from NVIDIA. This… more | Learning | parallelizationgpucuda |
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0
votes
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Expanse Home Page | Expanse at SDSC is a cluster designed by Dell and SDSC delivering 5.16 peak petaflops, and offers… more | Website | big-data |
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Expanse |
0
votes
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Factor Graphs and the Sum-Product Algorithm | A tutorial paper that presents a generic message-passing algorithm, the sum-product algorithm,… more | Docs | access-accountaimachine-learning |
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0
votes
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Fairness and Machine Learning | The "Fairness and Machine Learning" book offers a rigorous exploration of fairness in ML… more | Docs | aidata-analysisdeep-learningmore |
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0
votes
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fast.ai | Fastai offers many tools to people working with machine learning and artifical intelligence… more | Website | aimachine-learningpytorchmore |
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0
votes
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Feed Forward NNs and Gradient Descent | Feed-forward neural networks are a simple type of network that simply rely on data to be "fed-… more | Website | deep-learningmachine-learningneural-networks |
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0
votes
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File management of Visual Studio Code on clusters | Visual Studio Code, commonly known as VSCode, is a popular tool used by programmers worldwide. It… more | Learning | fasterfile-limitSCRATCHmore |
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0
votes
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Fine-tuning LLMs with PEFT and LoRA | As LLMs get larger fine-tuning to the full extent can become difficult to train on consumer… more | Video | fasteroptimizationperformance-tuningmore |
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0
votes
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Framework to help in scaling Machine Learning/Deep Learning/AI/NLP Models to Web Application level | This framework will help in scaling Machine Learning/Deep Learning/Artificial Intelligence/Natural… more | Learning | aideep-learningmachine-learningmore |
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0
votes
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FreeSurfer Tutorials | The official MGH / Harvard tutorial page for FreeSurfer. The FreeSurfer group has provided and… more | Learning | data-analysisimage-processingpsychology |
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0
votes
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FSL Lectures | This is the official University of Oxford FSL group lecture page. This includes information on… more | Learning | data-analysisimage-processingpsychology |
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0
votes
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Fundamentals of Cloud Computing | An introduction to Cloud Computing | Website | cloud-computing |
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0
votes
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Fundamentals of R Programming | This course is an introduction to the R programming language and covers the fundamental concepts… more | Learning | ACESTAMUplottingmore |
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0
votes
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Gaussian 16 | Gaussian 16 is a computational chemistry package that is used in predicting molecular properties… more | Tool | gaussiancomputational-chemistry |
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0
votes
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GDAL Multi-threading | Multi-threading guidance when using GDAL. | Learning | parallelizationgeographic-information-system |
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1
vote
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Gentle Introduction to Programming With Python | This course from MIT OpenCourseWare (OCW) covers very basic information on how to get started with… more | Learning | python |
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0
votes
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Geocomputation with R (Free Reference Book) | Below is a link for a book that focuses on how to use "sf" and "terra" packages… more | Learning | r |
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1
vote
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GIS: Geocoding Services | Geocoding is the process of taking a street address and converting it into coordinates that can be… more | Docs | geographic-information-system |
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0
votes
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GIS: Projections and their distortions | In GIS, projections are helpful to take something plotted on a globe and convert it to a flat map… more | Learning | geographic-information-system |
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0
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GIS: What is a Geodetic Datums? | Often when working with GIS, or spatial data, one encounters the word "datum" and it may… more | Learning | arcgisgeographic-information-system |
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0
votes
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Git Branching Workflow and Maneuvers | A couple of resources that: 1.) Presents and defends a git branching workflow for… more |
Learning | githubgit |
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0
votes
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Globus Documentation | Globus is a data transfer, sharing, automation, and discovery service used by hundreds of thousands… more | Docs | cloud-storagedata-sharingdata-managementmore |
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0
votes
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GPU Computing Workshop Series for the Earth Science Community | GPU training series for scientists, software engineers, and students, with emphasis on Earth… more | Learning | optimizationperformance-tuningprofilingmore |
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0
votes
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Guide to building AirSim on Linux machines | This article provides step-by-step instructions on how to build AirSim, a simulator for autonomous… more | Docs | documentationsetupgithubmore |
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0
votes
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Handwritten Digits Tutorial in PyTorch | This tutorial is essentially the "hello world" of image recognition and feed-forward… more | Website | aivisualizationdeep-learningmore |
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0
votes
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Harnessing the Power of Cloud and Machine Learning for Climate and Ocean Advances | Documentation and presentation on how to use machine learning and deep learning framework using… more | Learning | machine-learning |
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0
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Header-only C++ JSON library | JSON is a lightweight format for storing and transporting data, for example in a config file. This… more | Learning | resourcesc++ |
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0
votes
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High Performance Computing (HPC) 101 - Cluster | High Performance Computing (HPC) Cluster | Video | hpc-cluster-build |
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0
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High performance computing 101 | An introductory guide to High Performance Computing. | Website | administering-hpc |
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0
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Horovod: Distributed deep learning training framework | Horovod is a distributed deep learning training framework. Using horovod, a single-GPU training… more | Tool | deep-learningdistributed-computinggpu |
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0
votes
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Hour of Ci | Hour of Cyberinfrastructure (Hour of CI) is a nationwide campaign to introduce undergraduate and… more | Learning | arcgisgeographic-information-systemadministering-hpc |
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ArcGIS Users |
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votes
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How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev | A tutorial entitled "How the Little Jupyter Notebook Became a Web App: Managing Increasing… more | Learning | data-sharingdata-management-softwaredata-reproducibilitymore |
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0
votes
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How to use Rclone | Learn how to use Rclone to transfer data, specifically from your local drive to the Open Storage… more | Learning | data-transfer |
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1
vote
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HPC Carpentry | An HPC focused Carpentry community. Trainings include: HPC fundamentals, python, chapel, LAMMPS,… more | Website | software-carpentrytraining |
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3
votes
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HPC University | A comprehensive list of training resources. The tag list does not represent the full extent of… more | Learning | debuggingprofessional-developmentcompilingmore |
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0
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HPCwire | HPCwire is a prominent news and information source for the HPC community. Their website offers… more | Website | documentationbioinformaticspytorchmore |
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0
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Implementing Markov Processes with Julia | The following link provides an easy method of implementing Markov Decision Processes (MDP) in the… more | Tool | aimachine-learningjulia |
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0
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Info about retiring of R GIS packages rgdal, rgeos, maptools in 2023 | R GIS packages "rgdal", "rgeos", and "maptools" are package set to be… more | Docs | r |
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0
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InsideHPC | InsideHPC is an informational site offers videos, research papers, articles, and other resources… more | Website | aimachine-learningcommunity-outreach |
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0
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Installing Rocky Linux Operating System | Rocky Linux is an open-source enterprise operating system. It is compatible with Red Hat Enterprise… more | Learning | unix-environmentsoftware-installation |
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0
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Intro to Statistical Computing with Stan | The Stan language is used to specify a (Bayesian) statistical model with an imperative program… more | Docs | data-analysismachine-learningmonte-carlomore |
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0
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Introduction to GPU/Parallel Programming using OpenACC | Introduction to the basics of OpenACC. | Slides | gpucc++more |
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0
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Introduction to MP | Open Multi-Processing, is an API designed to simplify the integration of parallelism in software… more | Slides | expansefastersetupmore |
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0
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Introduction to Parallel Computing Tutorial | The tutorial is intended to provide a brief overview of the extensive and broad topic of Parallel… more | Learning | parallelization |
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0
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Introduction to Probabilistic Graphical Models | This website summarizes the notes of Stanford's introductory course on probabilistic graphical… more | Learning | aimachine-learning |
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1
vote
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Introduction to Python for Digital Humanities and Computational Research | This documentation contains introductory material on Python Programming for Digital Humanities and… more | Docs | aibig-datadata-analysismore |
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0
votes
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Introductory Tutorial to Numpy and Pandas for Data Analysis | In this tutorial, I present an overview with many examples of the use of Numpy and Pandas for data… more | Docs | aibig-datadata-analysismore |
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0
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Jetstream Home | Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research… more | Website | jetstream |
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Jetstream-2, AI Institutes Cyberinfrastructure |
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Jetstream2 Docs Site | Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research… more | Docs | jetstream |
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Jetstream-2 |
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Jetstream2 Status | Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research… more | Website | jetstream |
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Jetstream-2 |
0
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Language models and using HPC resources | Documentation and research based on the latest NLP text generation detection methods for 2023. | Learning | natural-language-processing |
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0
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Linux Tutorial from Ryan's Tutorials | The following pages are intended to give you a solid foundation in how to use the terminal, to get… more | Learning | file-systemsbashunix-environment |
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0
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Long Tales of Science: A podcast about women in HPC | A series of interviews with women in the HPC community | Website | science-gatewaycommunity-outreachprofessional-developmentmore |
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0
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Machine Learning in Astrophysics | Machine learning is becoming increasingly important in field with large data such as astrophysics.… more | Docs | plottingbig-dataimage-processingmore |
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0
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Machine Learning in R online book | The free online book for the mlr3 machine learning framework for R. Gives a comprehensive overview… more | Learning | data-analysismachine-learningr |
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0
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Machine Learning with sci-kit learn | In the realm of Python-based machine learning, Scikit-Learn stands out as one of the most powerful… more | Learning | aibig-datamachine-learning |
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1
vote
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Managing Python Packages on an HPC Cluster | This workshop will go into the different ways python packages can be managed in a cluster… more | Docs | documentationopen-ondemandpytorchmore |
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0
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MATLAB bioinformatics toolbox | Bioinformatics Toolbox provides algorithms and apps for Next Generation Sequencing (NGS),… more | Tool | visualizationdata-analysisbioinformaticsmore |
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0
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MATLAB with other Programming Languages | MATLAB is a really useful tool for data analysis among other computational work. This tutorial… more | Tool | cc++fortranmore |
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0
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MDAnalysis - Python library for the analysis of molecular dynamics simulations | MDAnalysis is a python based library of tools for the analysis of molecular dynamics simulations.… more | Tool | computational-chemistrymaterials-sciencepython |
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0
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Mechanism and Implementation of Various MPI Libraries | There is a detailed explanation about communication routines and managing methods of different MPI… more | Website | compilingmpi |
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Metadata Systems | Metadata is a vital topic in libraries and librarianship, encompassing structured information used… more | Learning | metadata |
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0
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Molecular Dynamics Tutorials for Beginner's | Links to MD tutorials for beginner's across various simulation platforms. | Learning | cloud-computingambercharmmmore |
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0
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MOPAC | MOPAC (Molecular Orbital PACkage) is a semi-empirical quantum chemistry package used to compute… more | Tool | computational-chemistry |
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0
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Moving-Lid-Driven Flow Simulation by Finite Difference Method | The listed repository contains code written in C++ to model the flow inside a cavity with a lid… more | Docs | computational-fluid-dynamics |
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0
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MPI Resources | Workshop for beginners and intermediate students in MPI which includes helpful exercises. Open MPI… more | Learning | parallelizationmpi |
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0
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Natural Language Processing with Deep Learning | CS244N is a renowned natural language processing course offered by Stanford University and taught… more | Video | natural-language-processingtrainingworkforce-development |
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0
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NCSA HPC Training Moodle | Self-paced tutorials on high-end computing topics such as parallel computing, multi-core… more | Learning | performance-tuningprofilingparallelizationmore |
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NCSA HPC-Moodle | Self-paced tutorials on high-end computing topics such as parallel computing, multi-core… more | Learning | technical-training-for-hpctrainingworkforce-development |
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0
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Neocortex Documentation | Neocortex is a new supercomputing cluster at the Pittsburgh Supercomputing Center (PSC) that… more | Docs | documentationai |
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0
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NERSC Training and Tutorials | A comprehensive collection of NERSC developed training and tutorial events, offered on regular… more | Learning | technical-training-for-hpctraining |
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0
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Neural Networks in Julia | Making a neural network has never been easier! The following link directs users to the Flux.jl… more | Tool | aideep-learningmachine-learningmore |
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0
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Neurodesk | Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of… more | Website | psychologycontainerssoftware-installationmore |
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0
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NITRC | The Neuroimaging Tools and Resources Collaboratory (NITRC) is a neuroimaging informatics knowledge… more | Website | data-analysisimage-processingdata-sharing |
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0
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Numba: Compiler for Python | Numba is a Python compiler designed for accelerating numerical and array operations, enabling users… more | Docs | vectorizationoptimizationperformance-tuningmore |
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0
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Numpy - a Python Library | Numpy is a python package that leverages types and compiled C code to make many math operations in… more | Tool | documentationbig-datadata-analysismore |
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0
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Oakridge Leadership Computing Facility (OLCF) Training Events and Archive | Upcoming training events and archives of training materials detailing general HPC best practices as… more | Learning | technical-training-for-hpctraining |
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0
votes
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Official Documentation for PyTorch and NumPy | The official documentation for PyTorch, a machine learning tensor-based framework, and NumPy, which… more | Docs | deep-learningneural-networkspytorchmore |
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0
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Official Documentation of VisIt | VisIt is a prominent open-source, interactive parallel visualization and graphical analysis tool… more | Docs | visItnovel-acceleratorsparticle-physics |
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0
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Official Python Documentation | The official documentation for Python 3.11.5. Python comes with a lot of features built into the… more | Docs | documentationpython | ||
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OnShape Documentation | This contains documentation for getting started with using OnShape for CAD. OnShape cloud-hosted… more | Tool | documentationfaster |
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0
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OnShape FeatureScripts: Custom features for everyone | OnShape FeatureScripts allow users to create their own features via OnShape's programming… more | Tool | documentationmaterials-scienceparticle-physics |
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1
vote
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Open OnDemand | Open OnDemand is an easy-to-use web portal that lets students, researchers, and industry… more | Website | ondemandadministering-hpccluster-managementmore |
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Open OnDemand, AI Institutes Cyberinfrastructure |
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votes
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Open Storage Network | The Open Storage Network, a national resource available through the XSEDE resource allocation… more | Website | data-managementdata-retentionopen-storage-networkmore |
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Large Data Sets, Open Storage Network |
0
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Open-Source Server Virtualization Platform | Proxmox Virtual Environment is a hyper-converged infrastructure open-source software. It is a… more | Learning | software-installation |
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0
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OpenMP and Multithreaded Jobs in GRASS | Techniques and support for multithreaded geospatial data processing in GRASS. | Tool | parallelizationgeographic-information-systemopenmp |
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0
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OpenStack Tutorial For Beginners | OpenStack Tutorial For Beginners | Video | openstack |
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0
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Optimizing Research Workflows - A Documentation of Snakemake | Snakemake is a powerful and versatile workflow management system that simplifies the creation,… more | Docs | documentationdata-analysisdata-reproducibilitymore |
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0
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Pandas - Python | pandas is a fast, powerful, flexible and easy to use open source data analysis and manipulation… more | Docs | documentationaibig-datamore |
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0
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Paraview UArizona HPC links (beginner) | These links take you to visualization resources supported by the University of Arizona's HPC… more | Docs | visualization |
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0
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Performance Engineering Of Software Systems | A class from MITOpenCourseware that gives a hands on approach to building scalable and high-… more | Learning | optimizationparallelizationtraining |
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0
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Practical Machine Learning with Python | This video series provides a holistic understanding of machine learning, covering theory,… more | Video | machine-learningprogrammingpython |
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0
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Probabilistic Semantic Data Association for Collaborative Human-Robot Sensing | Humans cannot always be treated as oracles for collaborative sensing. Robots thus need to maintain… more | Docs | aimachine-learning |
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0
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Python | Python course offered by Texas A&M HPRC | Learning | python |
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0
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Python Tools for Data Science | Python has become a very popular programming language and software ecosystem for work in Data… more | Video | aibig-datadata-analysismore |
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1
vote
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PyTorch for Deep Learning and Natural Language Processing | PyTorch is a Python library that supports accelerated GPU processing for Machine Learning and Deep… more | Docs | aibig-datadata-analysismore |
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0
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PyTorch Introduction | This is a very barebones introduction to the PyTorch framework used to implement machine learning.… more | Website | deep-learningmachine-learningneural-networksmore |
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0
votes
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QGIS Processing Executor | Running QGIS tools from the command line | Docs | geographic-information-system |
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0
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Quick and Robust Data Augmentation with Albumentations Library | Data augmentation is a crucial step in the pipeline for image classification with deep learning.… more | Tool | deep-learningpython |
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0
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R for Data Science | R for Data Science is a comprehensive resource for individuals looking to harness the power of the… more | Learning | visualizationdata-analysisdata-sciencemore |
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0
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R for Research Scientists | A book for researchers who contribute code to R projects: This booklet is the result of my work… more | Learning | software-carpentryworkforce-developmentr |
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0
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Raftlib: Open Source library for concurrent data processing pipelines | Raftlib is an open-source C++ Library that provides a framework for implementing parallel and… more | Tool | parallelizationpthreadsopenmp |
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0
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Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks | This repository contains information about Jupyter Widgets and how they can be used to develop… more | Website | aibig-datadata-analysismore |
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0
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Regulated Research Community of Practice | The daily news clearly shows the increasing threat to safety and privacy of data, personal as well… more | Website | community-outreachcybersecurity |
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Cybersecurity |
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Reinforcement Learning For Beginners with Python | This course takes through the fundamentals required to get started with reinforcement learning with… more | Video | deep-learningmachine-learningtensorflowmore |
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0
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Representation Learning in Deep Learning | Representation learning is a fundamental concept in machine learning and artificial intelligence,… more | Docs | deep-learningimage-processingmachine-learningmore |
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0
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Research Security Operations Center at IU | The NSF-funded ResearchSOC helps make scientific computing resilient to cyberattacks and capable of… more | Website | cybersecurity |
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Cybersecurity |
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Research Software Development in JupyterLab: A Platform for Collaboration Between Scientists and RSEs | Iterative Programming takes place when you can explore your code and play with your objects and… more | Learning | aivisualizationbig-datamore |
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Research Software Engineering Training Materials | An ongoing collection of RSE training material, workshops, and resources. We are compiling this… more | Website | astrophysicsdata-sciencenovel-acceleratorsmore |
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0
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Resource to active inference | Active inference is an emerging study field in machine learning and computational neuroscience.… more | Website | ai |
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0
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RMACC Website | Rocky Mountain Advanced Computing Consortium Website | Website | community-outreach |
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RMACC/Campus Champions Region 8 |
0
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Rockfish at Johns Hopkins University | Resources and User Guide available at Rockfish | Docs | rockfish |
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0
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Running Particle-in-Cell Simulations on HPC | WarpX is an advanced particle-in-cell code used to model particle accelerators, which needs to be… more | Docs | githubgithub-pagesnovel-accelerators |
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0
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Samtools Documentation | Samtools is a suite of programs for interacting with high-throughput sequencing data, especially in… more | Docs | documentationdata-analysisbioinformaticsmore |
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0
votes
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Science Gateway Tool/Web App Template (Jupyter Notebook + ipywidgets) | Use this template to turn any science gateway workflow into a web application! | Learning | data-analysisgithubastrophysicsmore |
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0
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Scikit-Learn: Easy Machine Learning and Modeling | Scikit-learn is free software machine learning library for Python. It has a variety of features you… more | Tool | documentationaiplottingmore |
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0
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Scipy Lecture Notes | Comprehensive tutorials and lecture notes covering various aspects of scientific computing using… more | Learning | visualizationdata-analysismachine-learningmore |
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0
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Set Up VSCode for Python and Github | VSCode is a popular IDE that runs on Windows, MacOS, and Linux. This tutorial will explain how to… more | Learning | gitpython | ||
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Setting up PyFR flow solver on clusters | These instructions were executed on the FASTER and Grace cluster computing facilities at Texas A… more | Learning | fastercomputational-fluid-dynamicsc++more |
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0
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Singularity/Apptainer User Manuals | Singularity/Apptainer is a free and open-source container platform that allows users to build and… more | Docs | containerssingularity |
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0
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Slurm Scheduling Software Documentation | Slurm is an open source, fault-tolerant, and highly scalable cluster management and job scheduling… more | Website | cluster-managementcluster-supportslurm |
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0
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Slurm Tutorials | Introduction to the Slurm Workload Manager for users and system administrators, plus some material… more | Learning | administering-hpccluster-managementhpc-cluster-architecturemore |
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0
votes
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Slurm User Group Mailing List | Mailing List | slurmschedulers |
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Solving differential equations with Physics-informed Neural Network | Differential equations, the backbone of countless physical phenomena, have traditionally been… more | Learning | neural-networks |
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0
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Spack Documentation | Spack is a package manager for supercomputers that can help administrators install scientific… more | Docs | spack |
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0
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TensorFlow for Deep Neural Networks | TensorFlow is a powerful framework for Deep Learning, developed by google. This specifically is… more | Tool | documentationfastertensorflow |
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0
votes
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Termius - Modern ssh platform | **Termius: The Modern SSH Client for 2023** Termius is the future-facing SSH client… more |
Website | cloud-computingdata-sharingdata-transfermore |
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0
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Texas A&M HPRC Training Site | Training Resources and Courses offered by Texas A&M's Research Computing Group | Learning | ACESTAMU |
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1
vote
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The Carpentries | We teach foundational coding and data science skills to researchers worldwide. | Website | administering-hpctraining |
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0
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The Official Documentation of Pandas | Pandas is one of the most essential Python libraries for data analysis and manipulation. It… more | Docs | plottingvisualization |
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0
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The Theory Behind Neural Networks (Very Simplified) | This video by the YouTube channel 3Blue1Brown provides a very simplified introduction to the theory… more | Video | neural-networks |
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0
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Thrust resources | Thrust is a CUDA library that optimizes parallelization on the GPU for you. The Thrust tutorial is… more | Learning | parallelizationgpuresources |
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0
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Time-Series LSTMs Python Walkthrough | A walkthrough (with a Google Colab link) on how to implement your own LSTM to observe time-… more | Website | aideep-learningmachine-learningmore |
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0
votes
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Trinity Tutorial for Transcriptome Assembly | Trinity is one of the most popular tool to assemble transcripts from RNA-Seq short reads. In this… more | Learning | biology |
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0
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Trusted CI | The mission of Trusted CI is to lead in the development of an NSF Cybersecurity Ecosystem with the… more | Website | cybersecuritytraining |
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Cybersecurity |
0
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Trusted CI Resources Page | Very helpful list of external resources from Trusted CI | Website | cybersecurity |
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Cybersecurity |
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Tutorial for OpenMP Building up and Utilization | The following link elaborates the usage of OpenMP API and its related syntax. There are also… more | Website | openmp |
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0
votes
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Ultimate guide to Unix | Unix is incredibly common and useful. This website provides all the common commands and… more | Website | bash |
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0
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Understanding LLM Fine-tuning | With the recent uprising of LLM's many business are looking at way to adopt these LLMs and… more | Learning | big-datatraining |
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0
votes
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UNIX/command line basics tutorial | Introductory training materials for working on the UNIX command line. | Learning | bash |
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0
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Use Windows Subsystem for Linux for HPC Command Line Access from Windows | Windows Subsystem for Linux (WSL) provides a Linux environment for Windows users to access HPC… more | Tool | workflowssh |
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1
vote
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Useful R Packages for Data Science and Statistics | This Udacity article listed the most frequently used R packages for data science and statistics.… more | Docs | plottingvisualizationdata-analysismore |
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0
votes
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Using Dask on HPC Systems | A tutorial on the effective use of Dask on HPC resources. The four-hour tutorial will be split into… more | Learning | technical-training-for-hpcjupyterhubpython |
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Using Linux commands in a python script (and the difference between the subprocess and os python modules) | Learn how to use Linux commands in a python script. Specifically, learn how to use the subprocess… more | Learning | cluster-managementprogrammingpython |
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vote
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Version control with Git | Understand the benefits of an automated version control system and the basics of how automated… more | Learning | version-controlgithubgit |
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Vulkan Support Survey across Systems | It's not uncommon to see beautiful visualizations in HPC center galleries, but the majority of… more | Docs | anvilbridges-2darwinmore |
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0
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Warewulf documentation | Warewulf is an operating system provisioning platform for Linux that is designed to produce secure… more | Website | documentationadministering-hpcdistributed-computingmore |
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0
votes
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Weka | Weka is a collection of machine learning algorithms for data mining tasks. It contains tools for… more | Tool | big-datadata-analysismachine-learningmore |
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0
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What are LSTMs? | This reading will explain what a long short-term memory neural network is. LSTMs are a type of… more | Learning | aideep-learningmachine-learningmore |
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0
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What is fairness in ML? | This article discusses the importance of fairness in machine learning and provides insights into… more | Docs | aivisualizationdata-analysismore |
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0
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What is VPN? How It Works, Types of VPN | A VPN, or Virtual Private Network, is a technology that creates a secure tunnel between your device… more | Website | vpn |
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0
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Why 'N How: Martinos Center for Biomedical Imaging: | The Why & How seminar series is designed to introduce research assistants, graduate students,… more | Learning | image-processing |
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0
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Wiki for Onboarding onto the C3DDB Cluster at MGHPCC | This is a resource for researchers and students looking to on-board onto the c3ddb cluster at… more | Learning | cluster-support |
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Women in HPC | Through collaboration and networking, WHPC strives to bring together women in HPC and technical… more | Website | community-outreach |
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WRF in the Public Cloud | CAC summer student employee Jeff Lantz describes his experiences in running the WRF weather… more | Video | awsazurecloud-commercialmore |
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